[ensembl-dev] sequence of genomic features

Jayaraman, Pushkala pjayaraman at mcw.edu
Fri Sep 6 00:13:02 BST 2013


I am trying to retrieve sequence of a given genomic feature for eg. Retrieve sequence of gene "A2m"

I know that I can get the "seq_region_id" from the database for the chromosome number and the coord_system_id is 2
But I cannot find the sequence in the homo_sapiens_core_72_37.dna

Are we supposed to download the fasta sequences separately elsewhere?
or am I missing a table?


Thanks,
Pushkala Jayaraman
Programmer/Analyst - Rat Genome Database
Human and Molecular Genetics Center
Medical College of Wisconsin
414-955-2229
http://rgd.mcw.edu

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