[ensembl-dev] ENCODE data from BioMart

[njohnson]

Hi Miklos

We currently don't import any methylation data into the Ensembl Biomart as we currently only host unprocessed CpG data. Once we get around to calling regions over this data (D/VMRs), then we will start making it available through Biomart. In the mean time, you can access the methylation data as BigBed files available on the ftp site:

	ftp://ftp.ensembl.org/pub/data_files/homo_sapiens/GRCh37/dna_methylation_feature/


Thanks

Nathan Johnson

Ensembl Regulation
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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On 28 Oct 2013, at 14:09, Miklos Cserzo <cserzo.miklos at public.semmelweis-univ.hu> wrote:

> 
> Dear Dev,
> 
> I would need the DNA methylation data from the ENCODE project. It is visible in the 'region in detail' view but I can not access it from BioMart for bulk download. Is it meant to be that way? Am I missing something? Please advice me.
> 
> Cheers,
> miklos
> 
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