[ensembl-dev] kegg pathway information

[Andy Yates]

Hi Hardip

I'm sorry to say that we do not hold any information relating to the kegg databases. However kegg do provide what looks like a nice rest Api at:

http://www.kegg.jp/kegg/docs/keggapi.html

The conv urls seem to be the way to convert from uniprot (after you've converted ensembl to uniprot) to kegg. Then you can use the find and get urls to get to the pathway info. You'll have to use the Gene object's get_all_DBLinks() method to retrieve the uniprot and refseq ids (since they are attached to translations and transcripts not to genes).

Hope this helps

Andy

Sent from my mobile.

> On 20 Oct 2013, at 12:42, Hardip Patel <Hardip.Patel at anu.edu.au> wrote:
> 
> Dear All
> 
> I wanted to associate list of human genes (possibly all) to kegg pathway id and associated information. I was just wondering if this information is available by using the gene objects in API.
> 
> Any help is greatly appreciated.
> 
> Kind regards
> 
> Hardip
> 
> 
> 
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/