[ensembl-dev] VEP registry with local database

[Dan Staines]

Hi Patrice,

Sorry to hear you're having problems - we'll see if we can sort things 
out for you!

> The local VEP installation works fine this single species (like cow),
> but when I try:
> variant_effect_predictor.pl  --species
> Escherichia_coli_str_k_12_substr_mg1655 --database -i test.txt
> --force_overwrite --registry my_registry_file
> or
> variant_effect_predictor.pl  --species
> Escherichia_coli_str_k_12_substr_mg1655 --database -i test.txt
> --force_overwrite --registry my_registry_file --genomes

Just to check, can you provide your registry file that you pass in this 
command line?

Many thanks,

Dan.

-- 
Dan Staines, PhD
Technical Coordinator, Ensembl Genomes
European Bioinformatics Institute (EMBL-EBI)
http://www.ebi.ac.uk/
http://www.ensemblgenomes.org/