[ensembl-dev] VEP populations frequency on output

[Guillermo Marco Puche]

Hello !

Currently I'm using *gmaf* and *maf_1kg* options.

On my output AFR_MAF, AMR_MAF, ASN_MAF, EUR_MAF are always being 
reported empty "-". Just GMAF is being reported non empty.
I want population frequency to be reported from 0 to maximum. I mean 
report all values I can.

I've tried adding the following options:

check_frequency    1
freq_pop           any
freq_freq          1
freq_gt_lt         gt
freq_filter        include


This does include more lines to VEP output but all the columns still empty.

Here's a variation example where other population should be reported:

http://www.ensembl.org/Homo_sapiens/Variation/Population?db=core;r=1:11905298-11906308;v=rs144578530;vdb=variation;vf=35767060

I don't know if this is a bug or I'm misunderstanding how it works. As I 
said I want all freqs to be reported without any minium or filter.

Thanks !

Best regards,
Guillermo

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20130528/d5127b8e/attachment.html>