[ensembl-dev] VEP output with regulatory feature & conservation plugin
Guillermo Marco Puche
guillermo.marco at sistemasgenomicos.com
Thu May 9 08:11:01 BST 2013
Hello,
While I'm using VEP flag "--regulatory" flag I notice a weird output in
my vep file.
Some lines present all empty columns except: Consequence, Feature and
Feature_type.
While I'm using VEP plugin Conservation (available in VEP github
repository) some lines present all empty columns except: Consequence,
Feature, Feature_type and Conservation.
I would like that the rest of my columns (obtained from VCF through
plugin) are also show. I think this has something to do with the
following lines in my plugin:
sub feature_types {
return ['Transcript'];
}
I'm am wrong?
Thank you !
Best regards,
Guillermo.
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