[ensembl-dev] protein compara pipeline - MAFFT_BINARIES environmental variable
Sharon Wei
weix at cshl.edu
Tue Jan 22 17:25:28 GMT 2013
Hi Ensembl Compara developers,
I am trying out the version69 protein compara pipeline and one problem I
encountered was the mafft_highmem jobs failed because the MAFFT_BINARIES
environmental variable was set on line67 in
ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/ProteinTrees/Mafft.pm
When I comment out this line, all the jobs finished without errors.
I am using MAFFT v7.015b.
I am wondering whether this is due to MAFFT version differences or
ensembl needs to update the module Mafft.pm.
Thanks,
Sharon
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