[ensembl-dev] GenomicAlignBlock and MethodLinkSpeciesSet

Diego Dominguez Munilla diegofarmacia at gmail.com
Fri Feb 15 12:38:42 GMT 2013


Hello!

I'm stock trying to get a specific GenomeAlignBlock

I've got a MethodLinkSpeciesSet from this parammeters:
method_link_type="PECAN" : species_set_name="amniotes"
But what i'm looking for is a species_set with birds (chicken, turkey,
zebrafinch) and lizard,
but PECAN aligned, to extract 4 homologuos sequences.
Every way I've tried always resulted retrieving the homologous region for
all amniotes
I'm sure that there is a right way to get it but after reading all the
"Compara Help" it's been impossible.

Thanks

Best  Regards.

Diego Dominguez
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