[ensembl-dev] pseudogenes in ensembl bacteria

Dan Staines dstaines at ebi.ac.uk
Wed Aug 28 15:25:51 BST 2013

On 08/28/2013 03:14 PM, Adam Witney wrote:
> Sorry to reopen this, but are there any reasons for the mismatches
> between genomes on the ftp site and in the database? e.g. Using your script
> https://gist.github.com/danstaines/6293539
> This genome is not extracted?
> ftp.ensemblgenomes.org/pub/current/bacteria/fasta/bacteria_25_collection/haemophilus_parainfluenzae_hk2019
Looks like the problem with the lookup file used by this script has 
recurred. I'll talk to the appropriate people and let you know.

Apologies for the problem...


Dan Staines, PhD
Technical Coordinator, Ensembl Genomes
European Bioinformatics Institute (EMBL-EBI)

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