[ensembl-dev] pseudogenes in ensembl bacteria

[Dan Staines]

On 08/28/2013 03:14 PM, Adam Witney wrote:
>
> Sorry to reopen this, but are there any reasons for the mismatches
> between genomes on the ftp site and in the database? e.g. Using your script
>
> https://gist.github.com/danstaines/6293539
>
> This genome is not extracted?
>
> ftp.ensemblgenomes.org/pub/current/bacteria/fasta/bacteria_25_collection/haemophilus_parainfluenzae_hk2019
>
Looks like the problem with the lookup file used by this script has 
recurred. I'll talk to the appropriate people and let you know.

Apologies for the problem...

Dan.

-- 
Dan Staines, PhD
Technical Coordinator, Ensembl Genomes
European Bioinformatics Institute (EMBL-EBI)
http://www.ebi.ac.uk/
http://www.ensemblgenomes.org/