[ensembl-dev] filter_common filter not working
duartemolha at gmail.com
Thu Aug 22 16:13:41 BST 2013
I was wondering if you could let me know what is going on with a annotation
run I have done.
here is the VCF line I am annotating:
22 20780091 . C
G 37059.72 PASS
and here is one of the my annotation output lines:
22_20780091_C/G 22:20780091 rs759610,rs77189880
G HOM ENSG00000244486
ENST00000266214 Transcript synonymous_variant
as you can see from this line the gmaf frequency being reported is C:0.1383.
However I was using the filter_common flag so this variation should have
been disregarded because the gmaf is above 0.01.
Can you explain to be if I am doing something wrong here?
Your help is much appreciated.
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