[ensembl-dev] Display BAM with respect to Ensembl features

[Ben Warren]

Hi,

I have a RNA-Seq alignment, in the form of a BAM file, where the reads are aligned to gene models, which correspond to the stable ids of gene features in my local Ensembl instance.

Is there any way to display the BAM in Ensembl? i.e. is it possible to display this BAM which references Ensembl gene features, not the scaffolds or contigs in a Ensembl assembly/coordinate-system?


Cheers

Ben


Ben Warren
Research Technologist

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