[ensembl-dev] Display BAM with respect to Ensembl features

Ben Warren Ben.Warren at plantandfood.co.nz
Thu Aug 22 01:30:36 BST 2013


I have a RNA-Seq alignment, in the form of a BAM file, where the reads are aligned to gene models, which correspond to the stable ids of gene features in my local Ensembl instance.

Is there any way to display the BAM in Ensembl? i.e. is it possible to display this BAM which references Ensembl gene features, not the scaffolds or contigs in a Ensembl assembly/coordinate-system?



Ben Warren
Research Technologist


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ben.warren at plantandfood.co.nz
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