[ensembl-dev] Get the gaps of a given assembly

[Michael Paulini]

Hi Sarah,

you will be happy to know that for Caenorhabditis elegans we (WormBase)
removed the last 4 Ns in 2004 and the last real gaps were filled over a
decade ago.
But I cannot speak for other "finished" genome assemblies.

best regards,

Michael

On 18/04/13 14:17, Sarah Djebali wrote:
> Dear developpers,
>
> I am doing a transcriptome analysis of different species over the time (ie
> for different ensembl versions), and I need to know where the gaps are
> located for different assemblies of different species, is there an easy way
> to do this automatically?
>
> I would need in particular the gaps for:
> - Caenorhabditis_elegans WBcel215
> - Caenorhabditis_elegans WS220
> - Saccharomyces_cerevisiae EF2
> - Saccharomyces_cerevisiae EF3
> - Saccharomyces_cerevisiae EF4
>
> thanks!
> Sarah
>
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20130418/3e6ccf83/attachment.html>