[ensembl-dev] Condel Plugin not working for VEP 71

[Will McLaren]

This warning is expected; I changed the versioning system for VEP this
release and the plugin system hasn't caught up yet.

Will


On 17 April 2013 15:55, Guillermo Marco Puche <
guillermo.marco at sistemasgenomicos.com> wrote:

>  On 04/17/13 14:52, Will McLaren wrote:
>
> Hi Guillermo,
>
> I'd guess you haven't got your configuration set up properly.
>
> If you have your plugins in the default directory (which it looks like
> you do), you need to edit the file:
>
> $HOME/.vep/Plugins/config/Condel/config/condel_SP.conf
>
> so that the condel.dir parameter points to the Condel config
> directory, I'm guessing in your case something like:
>
> condel.dir='/home/likewise-open/SGNET/gmarco/.vep/Plugins/config/Condel/'
>
>  I had added last config folder to absolute path in config.
> Now it seems VEP is running even if i'm still getting this message:
>
> 2013-04-17 16:17:08 - Read existing cache info
>
> 2013-04-17 16:17:08 - Warning: plugin Condel,/home/likewise-open/SGNET/gmarco/.vep/Plugins/config/Condel/config,b version (2.4) does not match the current VEP version (71)
>
> 2013-04-17 16:17:08 - You may experience unexpected behaviour with this plugin
>
> 2013-04-17 16:17:08 - Loaded plugin: Condel
>
> 2013-04-17 16:17:10 - INFO: Database will be accessed when using --hgvs
>
> 2013-04-17 16:17:10 - Starting...
>
>
> But Condel value is being calculated :)
>
>
> Thank you.
>
> Best regards,
> Guillermo.
>
>
> Regards
>
> Will
>
> On 17 April 2013 11:30, Guillermo Marco Puche<guillermo.marco at sistemasgenomicos.com> <guillermo.marco at sistemasgenomicos.com> wrote:
>
>  Hello,
>
> I'm trying to use the latest Condel Plugin obtained from GIT repository. I'm
> struggling with the following error message.
>
> 2013-04-17 12:24:19 - Read existing cache inforeadline() on closed
> filehandle SIFT at /home/likewise-open/SGNET/gmarco/.vep/Plugins/Condel.pm
> line 136.
>
> readline() on closed filehandle POLYPHEN at
> /home/likewise-open/SGNET/gmarco/.vep/Plugins/Condel.pm line 147.
>
> 2013-04-17 12:24:20 - Warning: plugin
> Condel,/home/likewise-open/SGNET/gmarco/.vep/Plugins/config/Condel/config,b
> version (2.4) does not match the current VEP version (71)
>
>
> Thank you.
>
> Best regards,
> Guillermo.
>
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