[ensembl-dev] ENSP to transcript

[Emily Pritchard]

Hi Jens

It's returning undef because the transcript adaptor expects a transcript 
ID. To fetch by a protein ID use the method fetch_by_translation_table_id:
http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1DBSQL_1_1TranscriptAdaptor.html#a973cb5603702027d5fab2f639fe26cd0

All the best

Emily

On 15/04/2013 10:32, Jens Christian Nielsen wrote:
> Hello Ensemblers,
>
> I got a list of protein stable id's like
> ENSP00000291232
> ENSP00000291232
> ENSP00000382378
> ...
>
> , and i want to retrieve the corresponding transcripts. I have tried 
> using:
>
> $transcript = $transcript_adaptor->fetch_by_stable_id($stable_id);
>
> but it returns undefined for all the stable id's. How can I fetch the 
> transcripts?
>
> Thank  you,
>
> Jens
>
>
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-- 
Dr Emily Pritchard
Ensembl Outreach Officer

EMBL - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK

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