[ensembl-dev] gene and exon data download from Illumina (Human BodyMap 2.0)

[th3]

Hi Jerry,
Sorry for taking so long to reply. Maybe you already found the way to do it.

The information about the introns is in the dna_align_table and is linked to the exon only.
I attached an example you can use.

Regards
Thibaut

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On 2012-08-11 00:30, Jerry Li wrote:
> I need to download both gene and exon data from the Ensembl realease
> 62: RNAseq data from Illuminas Human BodyMap 2.0 project. From what I
> read, I need to use perl API to access data from the RNA-Seq database
> homo_sapiens_rnaseq_65_37.
> I am new to perl API and I would appreciate any help with constructing
> a script in getting the following information for all genes and exons
> mapping to all 16 TISSUES:
>  
> For each Exon and Gene (separately)
> 
> 	* chromosome
> 	* strand
> 	* boundary coordinates (start and end)
> 	* raw_count
> 	* transcript_length
> 	* RPKM
> 
>  
> Your help is greatly appreciated!
>  
> -Jerry
> 
>  
>