[ensembl-dev] Bug in VEP

[Duarte Molha]

Dear developers,

I am sorry to bother you again (especially Will :) ) but in testing the VEP26, I got a crash using the command:

perl variant_effect_predictor.pl -i input_variants.vcf.gz -o output.ann --config vep.ini

Here is the error output:

2012-09-14 12:29:30 - Reading regulatory data from cache and/or database
[==================================>                                                                                                                                 ]   [ 22% ]
Can't call method "isa" on unblessed reference at /NGS_Tools/bin/VEP_26_testing/Bio/EnsEMBL/Funcgen/DBSQL/BaseFeatureAdaptor.pm line 135, <GEN0> line 28406.

In attachment is the config file I use.

Best regards,

Duarte Molha

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