[ensembl-dev] how to get genes from unplaced scaffolds via Perl API

Sergei Manakov manakov at ebi.ac.uk
Sat Sep 1 07:58:47 BST 2012


Hello,

According to GRCm38 description there are 21 chromosomes and 22
unplaced scaffolds this version of the mouse genome.

How can I get slices for these unplaced scaffolds?

this doesn't work:

my @slices = @{ $slice_adaptor->fetch_all('chromosome') };


thanks very much!
Sergei





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