[ensembl-dev] [Ensembl-variation] Bio::EnsEMBL::Variation::TranscriptVariationAllele

[Sarah Hunt]

Hi Sung,

Did you pick up the new API version by CVS checkout? If so, can you
try checking out a new version to a different location and see if you
still have this problem.

Also - there is no need to send queries to the variation team as well
as dev at ensembl.org. We all receive the messages to dev at ensembl.org, so
this is the only address you need use.

Best wishes,

Sarah

On Wed, Nov 21, 2012 at 1:30 PM, Sung Gong <sung at bio.cc> wrote:
> This one as well:
> Exception syntax error at
> ensembl-variation/modules/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm
> line 777, near "elsif"
>
>
> On 21 November 2012 13:25, Sung Gong <sung at bio.cc> wrote:
>>
>> Hi,
>>
>> In 69 API version, I found followings:
>>
>> Use of bare << to mean <<"" is deprecated at
>> ensembl-variation/modules/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm
>> line 767.
>> Use of bare << to mean <<"" is deprecated at
>> ensembl-variation/modules/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm
>> line 776.
>>
>> Can you debug this and update CVS please?
>>
>> Cheers,
>> Sung
>>
>>
>> On 22 August 2012 14:33, Sarah Hunt <seh at ebi.ac.uk> wrote:
>>>
>>> Hi Sung,
>>>
>>> Thanks for reporting this one. It has been updated in CVS now.
>>>
>>> Best wishes,
>>>
>>> Sarah
>>>
>>> On Wed, Aug 22, 2012 at 2:15 PM, Sung Gong <sung at bio.cc> wrote:
>>> > Hi,
>>> >
>>> > In 68 API version, you may have forgotten to write a debug flag?
>>> >
>>> > at line 742
>>> > print "formating a dup  $hgvs_notation->{hgvs} \n" if $DEBUG==1;
>>> > rather than
>>> > print "formating a dup  $hgvs_notation->{hgvs} \n";
>>> >
>>> > Can you update CVS please?
>>> >
>>> > Cheers,
>>> > Sung
>>> > _______________________________________________
>>
>>
>