[ensembl-dev] [Ensembl-variation] Bio::EnsEMBL::Variation::TranscriptVariationAllele

[Sung Gong]

This one as well:
Exception syntax error at
ensembl-variation/modules/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm
line 777, near "elsif"

On 21 November 2012 13:25, Sung Gong <sung at bio.cc> wrote:

> Hi,
>
> In 69 API version, I found followings:
>
> Use of bare << to mean <<"" is deprecated at
> ensembl-variation/modules/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm
> line 767.
> Use of bare << to mean <<"" is deprecated at
> ensembl-variation/modules/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm
> line 776.
>
> Can you debug this and update CVS please?
>
> Cheers,
> Sung
>
>
> On 22 August 2012 14:33, Sarah Hunt <seh at ebi.ac.uk> wrote:
>
>> Hi Sung,
>>
>> Thanks for reporting this one. It has been updated in CVS now.
>>
>> Best wishes,
>>
>> Sarah
>>
>> On Wed, Aug 22, 2012 at 2:15 PM, Sung Gong <sung at bio.cc> wrote:
>> > Hi,
>> >
>> > In 68 API version, you may have forgotten to write a debug flag?
>> >
>> > at line 742
>> > print "formating a dup  $hgvs_notation->{hgvs} \n" if $DEBUG==1;
>> > rather than
>> > print "formating a dup  $hgvs_notation->{hgvs} \n";
>> >
>> > Can you update CVS please?
>> >
>> > Cheers,
>> > Sung
>> > _______________________________________________
>> > Ensembl-variation mailing list
>> > Ensembl-variation at ebi.ac.uk
>> > http://listserver.ebi.ac.uk/mailman/listinfo/ensembl-variation
>>
>
>
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