[ensembl-dev] VEP annotation V2.2 and --most_severe

[Salih Tuna]

Dear Fiona,
I just received a mail from Will. I think that should sort the problem.
Best,
salih


On 23/05/2012 18:32, "Fiona Cunningham" <fiona at ebi.ac.uk> wrote:

> 
>  Dear Salih,
> 
> Apologies, I'm not sure if I followed exactly what you want to do
> here. Would this be equivalent to doing something like a 'diff' on the
> 2 different output files? Maybe this would solve your problem.
> 
> Best wishes,
> 
> Fiona
> 
> ------------------------------------------------------------------------------
> -----
> Fiona Cunningham
> Ensembl Coordinator, Ensembl Variation Project Leader.
> EMBL-EBI, Genome Campus, Hinxton, UK
> www.ensembl.org || www.lrg-sequence.org
> fiona at ebi.ac.uk   || t: +44 1223 494612
> 
> 
> On 20 May 2012 09:58, Salih Tuna <st5 at sanger.ac.uk> wrote:
>> Apologies,
>> I meant the option --per_gene for the most severe consequences...
>> 
>> 
>> 
>> On 20/05/2012 09:27, "Salih Tuna" <st5 at sanger.ac.uk> wrote:
>> 
>> Hi,
>> I am using VEP annotation V2.2
>> I did some annotation without using the option ‹most_severe. Now I would
>> like to eliminate the most severe ones for each gene. Is it possible to run
>> just this single module rather than running whole code again?
>> 
>> Thanks,
>> Salih
>> ________________________________
>> _______________________________________________
>> Dev mailing list    Dev at ensembl.org
>> List admin (including subscribe/unsubscribe):
>> http://lists.ensembl.org/mailman/listinfo/dev
>> Ensembl Blog: http://www.ensembl.info/
>> 
>> 
>> _______________________________________________
>> Dev mailing list    Dev at ensembl.org
>> List admin (including subscribe/unsubscribe):
>> http://lists.ensembl.org/mailman/listinfo/dev
>> Ensembl Blog: http://www.ensembl.info/
>> 
> 
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> List admin (including subscribe/unsubscribe):
> http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/