[ensembl-dev] VEP annotation V2.2 and --most_severe

[Fiona Cunningham]

 Dear Salih,

Apologies, I'm not sure if I followed exactly what you want to do
here. Would this be equivalent to doing something like a 'diff' on the
2 different output files? Maybe this would solve your problem.

Best wishes,

Fiona

-----------------------------------------------------------------------------------
Fiona Cunningham
Ensembl Coordinator, Ensembl Variation Project Leader.
EMBL-EBI, Genome Campus, Hinxton, UK
www.ensembl.org || www.lrg-sequence.org
fiona at ebi.ac.uk   || t: +44 1223 494612


On 20 May 2012 09:58, Salih Tuna <st5 at sanger.ac.uk> wrote:
> Apologies,
> I meant the option --per_gene for the most severe consequences...
>
>
>
> On 20/05/2012 09:27, "Salih Tuna" <st5 at sanger.ac.uk> wrote:
>
> Hi,
> I am using VEP annotation V2.2
> I did some annotation without using the option —most_severe. Now I would
> like to eliminate the most severe ones for each gene. Is it possible to run
> just this single module rather than running whole code again?
>
> Thanks,
> Salih
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