[ensembl-dev] 5 prime UTR coordinates

[Nick Fankhauser]

Hi!

I'm trying to get the coordinates of the 5' UTRs of all transcripts of a
given gene. But the "start" method can't be located for the UTR object.
Is there a different approach that makes it possible to retrieve the
UTR's coordinates?

This is what I tried:

foreach my $transcript ( @{ $gene->get_all_Transcripts() } ) {
	my $utr5	= $transcript->five_prime_utr();
	next if not defined $utr5;
	my $start5      = $utr5->start();
	my $end5        = $utr5->end();
}

Thanks!


Nick Fankhauser
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http://www.ccspmd.ethz.ch/people/fniklaus