[ensembl-dev] Sus scrofa is not a valid species name?

Alexander Pico apico at gladstone.ucsf.edu
Sat Jun 9 23:47:29 BST 2012


I'm getting errors on some version 67 (and genomes 14) databases where the
species name is not accepted by the Registry:

-------------------- WARNING ----------------------
MSG: Sus scrofa is not a valid species name (check DB and API version)
FILE: Bio/EnsEMBL/Registry.pm LINE: 1172
CALLED BY: Bio/EnsEMBL/Registry.pm  LINE: 957
Ensembl API version = 67

-------------------- EXCEPTION --------------------
MSG: Can not find internal name for species 'Sus scrofa'
STACK Bio::EnsEMBL::Registry::get_adaptor
STACK toplevel Ensembl_ETL_Device_v18_local.pl:425
Ensembl API version = 67

I'm seeing these errors for the following species databases:

And here is the version of Registry.pm I'm working with:
File: Registry.pm          Status: Up-to-date
   Working revision:    1.224
   Repository revision:    1.224
   Commit Identifier:    UMuKMdXcvEHkrB1w
   Sticky Tag:        branch-ensembl-67 (branch: 1.224.2)
   Sticky Date:        (none)
   Sticky Options:    (none)

And guesses?
 - Alex

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