[ensembl-dev] GRCh37 chrY sequence ?
hiram at soe.ucsc.edu
Fri Jun 8 17:29:11 BST 2012
Good Morning Ensembl:
A user reported to UCSC that the GRCh37/hg19 chrY sequence at UCSC is
different from the chrY sequence at Ensembl. I picked up the v67
chrY sequence from Ensembl and compared it to the UCSC chrY and
the GRCh37 chrY sequence and Ensembl has a different sequence.
I checked previous versions of chrY from Ensembl and they remain
the same, so it isn't a patched sequence. Anyone know what
the story is here ?
faCount composition measure of chrY sequence from genbank, UCSC and Ensembl:
#seq len A C G T N cpg
CM000686.1 59373566 7667625 5099171 5153288 7733482 33720000 217906
hg19.chrY 59373566 7667625 5099171 5153288 7733482 33720000 217906
Y.v67 59373566 6965778 4475138 4518436 7025177 36389037 163434
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