[ensembl-dev] Is Aspergillus_fumigatus not a valid species ?

[Dan Staines]

Hi Gang Chen,

This seems to work just fine for me using the public mysql server:
use warnings;
use strict;
use Bio::EnsEMBL::Registry;

my $registry = "Bio::EnsEMBL::Registry";
$registry->load_registry_from_db(
       -host    => 'mysql.ebi.ac.uk',
       -user    => 'anonymous',
       -port => 4157,
       -verbose => '1'
     );
my $gene_adaptor = $registry->get_adaptor('aspergillus_fumigatus', 
'Core', 'gene' );
for my $gene (@{$gene_adaptor->fetch_all()}) {
     print $gene->stable_id()."\n";
}

How are you building your registry?

Thanks,

Dan.

-- 
Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/