[ensembl-dev] Is Aspergillus_fumigatus not a valid species ?

陈岗 danielchen06 at gmail.com
Wed Jul 4 10:17:19 BST 2012

Hi All

I use AIP to retrieve gene information. When retrieve species
aspergillus_fumigatus, an error occurs.
My DB version is 67 and 14_67, API version is 67.

-------------------- WARNING ----------------------
MSG: Aspergillus_fumigatus is not a valid species name (check DB and API
FILE: Bio/EnsEMBL/Registry.pm LINE: 1172
CALLED BY: Bio/EnsEMBL/Registry.pm  LINE: 957
Ensembl API version = 67

-------------------- EXCEPTION --------------------
MSG: Can not find internal name for species 'Aspergillus_fumigatus'
STACK Bio::EnsEMBL::Registry::get_adaptor
STACK toplevel /usr/local/Ensembl/perl/EnsemblDataNew.cgi:83
Ensembl API version = 67

The line 83 of my script is:
 my $gene_adaptor = $registry->get_adaptor($my_specise, 'Core', 'gene' );

I doubt it's API problem. Can you check it ?

Thanks million

Gang Chen
Taicang Institute For Life Science Information
Address: A2/162, Renmin South Road, Taicang, 215400, Jiangsu Province,
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