[ensembl-dev] species tree for EnsemblGenomes compara databases
alexandra louis
alouis at biologie.ens.fr
Fri Jan 13 12:18:50 GMT 2012
Hi everybody,
is there a way to get the species tree that has been used to build the
protein trees for each EnsemblGenome compara databases?
I found the "species_tree_string" tag in the table protein_tree_tag for
ensembl_compara_protists_12_65
species_tree_string
(((2850*,35128*)2836,((164328*,67593*,403677*)4783,65071*)4762)33634,(5702*,5664*)5654,((5855*,5851*)418103,(5825*,5823*)418101,36329*)5820,44689*)2759;
but, I can't find anything for the metazoa or plants.
any clues?
thanks a lot,
Alex
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Alexandra LOUIS
Email: alouis at biologie.ens.fr Tel: +33(0)1 44 32 23 71
Dynamique et Organisation des Genomes (Dyogen) - IBENS UMR8197
Ecole Normale Superieure
46 rue d'Ulm, 75230 Paris Cedex 05
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