[ensembl-dev] how to get D.melanogaster and D.virilis alignment from compara
Sergei Manakov
manakov at ebi.ac.uk
Sat Feb 18 08:00:03 GMT 2012
Hello,
I went through Compara API Tutorial
(http://uswest.ensembl.org/info/docs/api/compara/compara_tutorial.html),
and tried to adopt the example scripts to get the alignment blocks
between "dosophila_melanogaster" and "drosophila_virilis".
It seems that "drsophila_virilis" doesn't work in:
my $this_meta_container_adaptor =
Bio::EnsEMBL::Registry->get_adaptor("drosophila_virilis", 'core',
'MetaContainer');
So is it possible to get melanogaster and virilis alignment from the
ensembl? If yes, maybe somebody has a working code for that?
thanks,
Sergei
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