[ensembl-dev] Newbie: Possible to use Condor instead of LSF with Blast?
Giulietta
gspudich at ebi.ac.uk
Tue Feb 7 16:33:57 GMT 2012
Hello,
Apologies for the delay.
Thanks for your message. We don't have experience with with systems
other than LSF. I did talk with some of the developers on the project
and they suggest that Lava might be sufficient, but as this hasn't been
tested, we are unsure.
I hope this helps and best of luck with your project.
Regards,
Giulietta
On 13/01/2012 10:23, Martin Steele wrote:
> Hi All,
>
> I notice from the file ${ENSEMBL_ROOT}/ctrl_scripts/start_server that
> an LSF installation is expected, i.e.:
>
> # LOAD LSF ENVIRONMENT - REQUIRED FOR BLAST
> my $cmd = ". /usr/local/lsf/conf/profile.lsf;" if -e
> '/usr/local/lsf/conf/profile.lsf';
>
> I would like to use a different batch system if possible, namely
> Condor, and I notice that there's a company that offers such a service
> commercially, so it should be possible. However, I can't find any
> online resource describing how to perform the switch. Does anyone on
> this list know how to, and would they care to share the information?
>
> Failing that, is Platform Lava (LSF's watered-down free version) a
> suitable alternative?
>
> TIA,
> Bob
>
>
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