[ensembl-dev] VEP version 2.7 performance is pitiful when providing parameters from a config file

[Dougherty, Gregory T.]

If I use the attached config file with an installation that has the specified cache file, I get a performance of 1 variant / second on a specific vcf file.  If I run the exact same options from the command line, I get 150+ variants / second.

Why does the config file give such horrible performance?
--
Gregory Dougherty
Sr. Analyst/Programmer | Information Technology
41st Street Professional Building
Ff 3-410-C
(507) 284-8493 | dougherty.gregory at mayo.edu<mailto:dougherty.gregory at mayo.edu>
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