[ensembl-dev] How to distinguish variation types?

陈岗 danielchen06 at gmail.com
Mon Aug 13 09:12:18 BST 2012


Hi All

I am using SQL sentence to extract variation data with transcritp stable
id, such as

SELECT *
FROM transcript_variation tv
LEFT JOIN variation_feature vf ON ( vf.variation_feature_id =
tv.variation_feature_id )
WHERE tv.feature_stable_id =  'ENST00000419234'

My question is how to distinguish variations types, such as invertion,
deletion, indel, substitution and so on.

Thanks
-- 
Gang Chen
TILSI
Taicang Institute For Life Science Information
Address: A2/162, Renmin South Road, Taicang, 215400, Jiangsu Province,
P.R.China
Phone:(+86)512-82782588
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