[ensembl-dev] hardcoded value in Slice::get_all_Structural_VariationFeatures
Jay Humphrey
jhumphre at ebi.ac.uk
Mon Apr 23 13:30:01 BST 2012
I'm just curious about why this function has a table value "SO:0000051"
hardcoded into it? Source comments refer to it as CNV_PROBE, so why not
just use "CNV_PROBE", since that's also in the table?
In Bio::EnsEMBL::Slice
sub get_all_CopyNumberVariantProbeFeatures {
my $self = shift;
my $source = shift;
return
$self->get_all_StructuralVariationFeatures($source,0,'SO:0000051');
}
--
Jay Humphrey Ensembl Genomes Web Developer
EMBL-EBI Tel: +44-(0)1223-492682
Wellcome Trust Genome Campus Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
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