[ensembl-dev] hardcoded value in Slice::get_all_Structural_VariationFeatures

Jay Humphrey jhumphre at ebi.ac.uk
Mon Apr 23 13:30:01 BST 2012


I'm just curious about why this function has a table value "SO:0000051" 
hardcoded into it?  Source comments refer to it as CNV_PROBE, so why not 
just use "CNV_PROBE", since that's also in the table?

In Bio::EnsEMBL::Slice

sub get_all_CopyNumberVariantProbeFeatures {
   my $self   = shift;
   my $source = shift;

   return 
$self->get_all_StructuralVariationFeatures($source,0,'SO:0000051');
}

-- 
Jay Humphrey                   Ensembl Genomes Web Developer
EMBL-EBI                       Tel: +44-(0)1223-492682
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/





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