[ensembl-dev] How to get a tree stable id ?

[Moretti Sébastien]

Hi

with the ensembl 66 API, I cannot get the gene tree stable id I used to 
get before with previous ensembl API.

I build a protein tree adaptor, fetch a node with a node_id but cannot 
get the ENSGT00* id anymore.


e.g. with node_id = 2

my $tree      = $protein_tree_adaptor->fetch_node_by_node_id($node_id);
my $stable_id = $tree->node_id;

This returns 2, and not the ENSGT00* id I expect.
I cannot see any ENSGT00* strings with Data:Dumper in the $tree object.

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://selectome.unil.ch/ http://bgee.unil.ch/