[ensembl-dev] V.64 - Perl Warning issued when using load_registry_from_multiple_dbs()

[Andy Yates]

Hi Giuseppe,

Sorry about that it seems that a hash reference was incorrectly added. We've fixed the code in HEAD & in 64. Sorry for the long delay for the fix

Andy

On 6 Oct 2011, at 14:51, Giuseppe G. wrote:

> Doing a side by side comparison of load_registry_from_multiple_dbs() between v.63 and v.64 reports the following difference:
> 
> 63 (line 2123) local %registry_register;
> 64 (line 2124) local %registry_register={};
> 
> I guess the curly braces try to create a hash reference.
> 
> Thanks
> G
> 
> On 06/10/11 14:33, ian Longden wrote:
>> It sounds like you may be missing a bracket. This call should look
>> something like:-
>> 
>>    $registry->load_registry_from_multiple_dbs( {
>>         '-host'     =>  'ensembldb.ensembl.org  <http://ensembldb.ensembl.org>',
>>         '-user'     =>  'anonymous',
>>         '-verbose'  =>  '1'
>>       },
>>       {
>>         '-host'      =>  'server.example.com  <http://server.example.com>',
>>         '-user'      =>  'anonymouse',
>>         '-password'  =>  'cheese',
>>         '-verbose'   =>  '1'
>>       } );
>> 
>> 
>> If you send the actual call it would be easier to diagnose.
>> 
>> Cheers,
>> Ian.
>> 
>> 
>> On Thu, Oct 6, 2011 at 2:09 PM, Giuseppe G. <G.Gallone at sms.ed.ac.uk
>> <mailto:G.Gallone at sms.ed.ac.uk>> wrote:
>> 
>>    Hi,
>> 
>>    I've just started using v.64. Perl issues a warning when processing
>>    the arguments of load_registry_from_multiple___dbs():
>> 
>>    Reference found where even-sized list expected at
>>    [SRCDIR]/ensembl/modules/Bio/__EnsEMBL/Registry.pm line 2124.
>> 
>>    Thanks
>>    G
>> 
>>    --
>> 
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>>    Scotland, with registration number SC005336.
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> 
> -- 
> 
> The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.
> 
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---
Andrew Yates                   Ensembl Core Software Project Leader
EMBL-EBI                       Tel: +44-(0)1223-492538
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensembl.org/