[ensembl-dev] Annotations for Insertion and Deletions

Salih Tuna st5 at sanger.ac.uk
Wed Oct 19 13:02:15 BST 2011

I am using  emsembl API variant effect predictor (version 2.2) to annotate
gene names,variations etc from the VCF file.
I use the following command

redictor.pl -i syzygy_noannotation.vcf -o syzygy_annotation.vcf

The annotations works fine except when there is insertion or deletions.

For example chr1:143767179 has insertion and is not annotated. There are
many positions similar to this.

I was wondering if you could help me with this problem?


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