[ensembl-dev] Making annotations for data from hg18 or build36

[Will McLaren]

Hi Salih,

What kind of annotations are you looking to do?

You have two options:

1) Use the last Ensembl build to use NCBI36, which was e!54 (you will
need the API from e!54). If you are looking to use the VEP, currently
this isn't straightforward, but I have an experimental cache file
built from NCBI36 coordinates that I could make available to you if
this is your intention and you are willing to be a guinea pig!

2) Convert the coordinates you have to GRCh37 using Ensembl's assembly
mapper tool:

http://www.ensembl.org/tools.html

Hope this helps!

Will McLaren
Ensembl Variation

On 30 November 2011 11:12, Salih Tuna <st5 at sanger.ac.uk> wrote:
> Hi,
> I would like to make annotations for data whose reference is hg18.
> I looked at the help file but couldn’t see the which parameters I should
> change for hg18 or build36?
>
> Thanks for your help,
> Salih
>
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