[ensembl-dev] regulatory_region_variant

[Will McLaren]

Hi Chris,

You need to enable the --regulatory option when you run the script,
and ensure that you have the ensembl-funcgen API installed

Will

On 11 November 2011 08:47,  <cj5 at sanger.ac.uk> wrote:
> Hi,
> According to the documentation, the ensembl api provides
> 'regulatory_region_variant' predicted variation consequences.
>
> http://www.ensembl.org/info/docs/variation/index.html
>
> But I've had a look at some of our annotations from the VEP 2.2, ensembl
> version 64, and not come across any instance of this. Is it not provided
> by the VEP?
>
> I noticed a posting about this in the dev archives which suggests that
> since v62 we need to use VariationAdaptor for these annotation, but would
> like to check.
>
> http://lists.ensembl.org/pipermail/dev/2011-May/001243.html
>
>
> Thanks
> Chris
>
>
>
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