[ensembl-dev] exon coordinate discrepancy between NCBI and Ensembl

Reece Hart reece at harts.net
Fri May 27 05:30:59 BST 2011

Kiran, Daniel-
Thanks for the suggestion and warnings regarding loading RefSeqs directly.
I'm going to start up a new thread asking this explicitly.

I completely agree that it is better to use a reference assembly sequence
rather than the sequence in the RefSeq. I intend to use RefSeqs solely for
the exon structure which is the only way to map HGVS variants that are based
on NCBI sequences to the reference genome in the general case. Or, am I
missing something?

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