[ensembl-dev] COSMIC data

[Fiona Cunningham]

Hello,

You can find out which version of cosmic ensembl is using from the
source table, version field. (Currently 51). In fact this is missing
from the website so I will make sure it gets added for the next
release.
We update every Ensembl release of the latest COSMIC data and
integrate this with our other variation data. Currently we include all
SNP changes and small insertions and deletions from COSMIC but we do
not yet have structural variation data from them.

Here is the link to the download page:
http://www.ensembl.org/info/data/ftp/index.html

There are two files of somatic data, one which includes consequences
and the other without the consequences.

Best regards,

Fiona

------------------------------------------------------
Fiona Cunningham
Ensembl Variation Project Leader, EBI
www.ensembl.org
www.lrg-sequence.org
t: 01223 494612 || e: fiona at ebi.ac.uk



On 25 May 2011 13:33, Catherine Leroy <cl6 at sanger.ac.uk> wrote:
> Hi,
>
> I'm sitting next to the cosmic team.
>
> Here is what Simon told me :
> The cosmic release is every 2 months and the ensembl one is every 3 months
> so it's hard to have both in sync.
> All the cosmic mutations which have genomic coordinate are given to Ensembl.
>
> To get all cosmic data you can use the csv file on the ftp site.
>
> For more information please right to Simon Forbes (saf at sanger.ac.uk)
>
> Cheers,
> Catherine
>
> On 25 May 2011, at 11:58, Thomas Juettemann wrote:
>
>> Hello all,
>>
>> I was wondering if someone has some more information about the COSMIC
>> data in Ensembl Variation? Is all of COSMIC included and how often is
>> it updated?
>>
>> Thanks for any pointers!
>>
>> Cheers,
>> Thomas
>>
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>
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