[ensembl-dev] Gene Tree ambiguous nodes

[Sébastien Moretti]

At the same time, do you store lost taxa in trees (NHX) as TreeFam does ?

> Hi
>
> I wonder how ambiguous nodes are defined in gene trees.
> Nothing seems to be attached to the D flag in NHX labels for ambiguous
> nodes.
>
>
> ambiguous nodes seem to be related to bootstrap values.
> Is it true ?
>
> If true, what is the bootstrap threshold you use to define a node as
> ambiguous ?
>
> Regards

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://bioinfo.unil.ch/