[ensembl-dev] Fwd: Re: no chrun exons or genes?

[Andrea Edwards]

Hi

Thanks for reply

Looking further into it, it seems there are no exons or genes on chrun
for human

select count(*) from gene g inner join seq_region sr
using(seq_region_id)where name Regexp 'Un';
----------+
| count(*) |
+----------+
|        0 |
+----------+
1 row in set (0.07 sec)

Why is this?



On 12/05/11 08:18, Will McLaren wrote:
>  Hi Andrea,
>
>  As long as you have variations on the same chromosome together and
>  sorted by position, the order of the chromosomes makes no difference.
>
>  Will
>
>  On Thursday, 12 May 2011, Andrea Edwards<edwardsa at cs.man.ac.uk>   wrote:
>>  Hi
>>
>>  The readme file for VEP recommends input files be sorted by chromosome for whole genome mode. Where do chrUn chromosomes come in the sorting order for this?
>>
>>  thanks
>>
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