[ensembl-dev] Fwd: Re: no chrun exons or genes?
edwardsa at cs.man.ac.uk
Thu May 12 16:02:29 BST 2011
Thanks for reply
Looking further into it, it seems there are no exons or genes on chrun
select count(*) from gene g inner join seq_region sr
using(seq_region_id)where name Regexp 'Un';
| count(*) |
| 0 |
1 row in set (0.07 sec)
Why is this?
On 12/05/11 08:18, Will McLaren wrote:
> Hi Andrea,
> As long as you have variations on the same chromosome together and
> sorted by position, the order of the chromosomes makes no difference.
> On Thursday, 12 May 2011, Andrea Edwards<edwardsa at cs.man.ac.uk> wrote:
>> The readme file for VEP recommends input files be sorted by chromosome for whole genome mode. Where do chrUn chromosomes come in the sorting order for this?
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