[ensembl-dev] [SPAM] - Re: Quick question RE exons and regulatory regions - Email found in subject

[Oliver, Gavin]

Thanks for this!

 

Is there any sort of distance that is recommended/has been previously
utilized for such purposes?

 

Best, 

 

Gavin

 

________________________________

From: Daniel Sobral [mailto:sobral at ebi.ac.uk] 
Sent: 03 May 2011 12:56
To: Oliver, Gavin; dev ensembl
Subject: [SPAM] - Re: [ensembl-dev] Quick question RE exons and
regulatory regions - Email found in subject

 

At the moment, we cannot associate a regulatory region to a specific
gene.
What you can do is get all regulatory regions around a certain distance
of the gene.

Hope that helps,
Daniel

On 03/05/2011 12:22, Oliver, Gavin wrote: 

Hi all, 

 

Just wondering - using the relevant APIs is it possible to take a list
of genes, extract all associated exon coordinates and also the
coordinates of associated regulatory regions?

 

I know the exon bit is ok, but it's the associated regulatory regions
I've never looked at before...

 

Cheers, 

 

Gavin

 

 

  

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