[ensembl-dev] Fw: [Fwd: Re: [BioMart Users] Problem with Zebrafish Database]

[Koray Kaya]

Hello, There is a problem defined below: ---------------------------- Original Message ---------------------------- Subject: Re: [BioMart Users] Problem with Zebrafish Database From: "Elena Rivkin" <Elena.Rivkin at oicr.on.ca> Date: Fri, March 25, 2011 2:43 pm To: "Gulhan Saracaydin" <saracaydin at ug.bilkent.edu.tr> "users at biomart.org" <users at biomart.org> -------------------------------------------------------------------------- Gulhan, I have tried various queries - and yes, while I get no results from 500,000-1,000,000bp, if I set the filters to for ex. 10,000,000-60,000,000 I get 27 miRNA back. Which means that this is most likely related to the data and not the filters. In this case, I would recommend contacting Ensembl help desk, they are very good at helping with these kinds of questions. Good luck, Elena On 11-03-25 5:06 AM, "Gulhan Saracaydin" <saracaydin at ug.bilkent.edu.tr> wrote: > > >Hello BioMart developers, > >I have tried to generate a list of all Danio Rerio miRNA-coding genes that >are located on chromosome 3, between base-pairs 500,000-1,000,000. >However, I think there is a problem in Zebrafish database since I got the >miRNA-coding genes without any selection but when I select the region, I >got nothing. Also, I used miRBase to confirm that there are miRNAs in >Danio Rerio in selected region. > >I wonder whether there is a problem with Zebrafish Gene Database in >Ensembl and BioMart. If you give me an answer about this question, I would >be glad. > >Hoping to hear from you, > >Kind regards, > >Gulhan Saracaydin > > >_______________________________________________ >Users mailing list >Users at biomart.org >https://lists.biomart.org/mailman/listinfo/users
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