[ensembl-dev] get the total length of genomic features
zhihuali
lzhtom at hotmail.com
Thu Mar 17 15:59:15 GMT 2011
Dear fellow developers,
Recently I met with a problem where I need to get
the total length of each genomic feature. For example
I'll need to know the total length the 3' UTR region for all
protein-coding genes, total length of Intron regions
for all protein-coding genes, total length of Repeats ...........
I can get all these regions from
Ensembl by looping through geneadaptors etc, but a lot of
the regions will be overlapping and I"ll need to do a lot of
post-processing.
Does any one know about an easy way to get the total length
of these genomic features through ensembl API?
Thanks a lot!
Zhihua Li
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