[ensembl-dev] Convert refSeq transcript ids (NM_*) to ENST Ids?

[mailsvl at fastmail.fm]

You could use biomart for this, use a filter for the refseq ids and
output the ENST ids:
http://www.biomart.org/

Link to an example query (for human):
http://www.biomart.org/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_transcript_id|hsapiens_gene_ensembl.default.feature_page.refseq_dna&FILTERS=hsapiens_gene_ensembl.default.filters.refseq_dna."NM_000059"&VISIBLEPANEL=resultspanel

Greetings, 
Stef

----- Original message -----
From: "Mark Aquino" <aquinom85 at me.com>
To: dev at ensembl.org
Date: Mon, 20 Jun 2011 15:03:55 -0400
Subject: [ensembl-dev] Convert refSeq transcript ids (NM_*) to ENST Ids?

Hey all,

Is there a way to convert refseq ids (NM_xxxx) to ENST ids for
transcripts if I have a list of ref seq IDs?  

Thanks,
Mark Aquino

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