[ensembl-dev] Pongo 9600 to 9601

Gregory Jordan greg at ebi.ac.uk
Wed Jun 15 15:44:28 BST 2011


Hi all,

I came across a surprising change in the genome_db table from Compara v61 to
v62: the orangutan taxon ID and species binomial are not what they used to
be!

The change is understandable, as the Sumatran taxon identifier is more
appropriate for the genome source, but I was caught off guard (and so was
some of my code) by the abrupt change... perhaps some mention of this could
go into the Ensembl changelog?

Cheers,
 Greg

mysql> select * from ensembl_compara_62.genome_db where name like
"%pongo%"\G;
*************************** 1. row ***************************
    genome_db_id: 60
        taxon_id: 9601
            name: pongo_abelii
        assembly: PPYG2
assembly_default: 1
       genebuild: 2007-10-Ensembl

mysql> select * from ensembl_compara_61.genome_db where name like
"%pongo%"\G;
*************************** 1. row ***************************
    genome_db_id: 60
        taxon_id: 9600
            name: pongo_pygmaeus
        assembly: PPYG2
assembly_default: 1
       genebuild: 2007-10-Ensembl
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