[ensembl-dev] pipeline run with status 'VOID'

[Jan Vogel]

there's also a -once option you can use.

On Jun 10, 2011, at 8:18 AM, Susan Fairley wrote:

> 江JWK wrote:
>> Hi
>> 
>> the problem is that the rulemanager script continue to run on the cluster, although all other jobs have been finished (except these VOID jobs).
>> In normal situations, when all jobs are successfully completed, the rulemanager script will be terminated automatically, 
>> so it seems likely that these VOID jobs cause the rulemanager script consider some jobs still not finished yet, so it continues to run.
>> Should i terminate the rulemanger script manually?
> 
> Yes. When you can see that all jobs have run as far as they can,
> terminating rule_manager can be sensible.
> 
> Rule_manager can also continue running for a short period after all jobs
> have successfully completed, especially if the input_id_analysis table
> has become large and rule manager needs to check lots of jobs to see if
> anything should be run. If you don't want to wait for rule_manager, you
> may want to kill it in these circumstances too.
> 
> After you terminate rule_manager, remember to check the meta table for a
> pipeline.lock, which may be left behind and will prevent you running
> rule_manager again until it is removed.
> 
> You should also remove the void Genscan jobs from the pipeline, or at
> least make sure that their settings are such that rule_manager won't
> pick them up next time you run it.
> 
> Regards,
> Susan.
> 
>> 
>> monitor output:
>> 
>> Pipeline current status
>> 
>> Name     Status Count   Analysis-id
>> Genscan  VOID  3      3
>> 
>> 
>> 
>> 
>> 
>> 
>> ------------------------------------------------------------------------
>> 
>> _______________________________________________
>> Dev mailing list    Dev at ensembl.org
>> List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
>> Ensembl Blog: http://www.ensembl.info/
> 
> 
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/