[ensembl-dev] problem with homo_sapiens_variation_63_37

Rhoda Kinsella rhoda at ebi.ac.uk
Wed Jul 13 08:35:28 BST 2011


Hi Mark
The mart_transcript_variation table is a temporary table created  
specially for the building of the BioMart databases and should not  
have been made publicly available. Please exclude this table when you  
are doing your mysqlimport.
Regards
Rhoda

On 12 Jul 2011, at 18:07, Mark Aquino wrote:

> Hey,
>
> In the homo_sapiens_variation_63_37.sql file not all tables are  
> present (e.g. mart_transcript_variation) thus causing the  
> mysqlimport to crash when trying to populate the new database.
>
> Best,
> Mark Aquino
>
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Rhoda Kinsella Ph.D.
Ensembl Bioinformatician,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.





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