[ensembl-dev] Uniprot release / CRC64

[Sébastien Moretti]

Thanks Magali.

> Hi Sébastien,
>
> Yes, each core, otherfeatures and funcgen databasse has an analysis table.
> This table contains an entry for each analysis used in the database,
> with some information about the analysis, for example the program or the
> parameters used.
>
>
> Regards,
> mag
>
> Sébastien Moretti wrote:
>> Thanks Magali.
>>
>> I will table a look at this analysis table.
>>
>> There is one analysis table per species ?
>>
>>> Hi Sébastien,
>>>
>>> You will not necessarily find it for each species, but in more recent
>>> releases, we have tried to include information about the Uniprot and
>>> Refseq releases used for each evidence.
>>> If you query the databases, you can find this information in the
>>> analysis table, for your analysis of interest.
>>>
>>> We do not store a checksum for protein entries, as the way we retrieve
>>> the data can vary and there might not be any.
>>> For more recent builds though, you can find a more detailed genebuild
>>> documentation which will tell you, for each source of evidence used, how
>>> many sequences were retrieved to start with, how many aligned and how
>>> many were actually used in the final gene set.
>>>
>>> Hope that helps.
>>>
>>>
>>> Regards,
>>> mag
>>>
>>> Sébastien Moretti wrote:
>>>> Hi
>>>>
>>>> do you store somewhere Uniprot release, and other db releases, you
>>>> used for each ensembl release ?
>>>>
>>>> Also, do you store the checksum (CRC64) for protein entries you used
>>>> to build an ensembl release ?
>>>>
>>>> Regards

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://bioinfo.unil.ch/