[ensembl-dev] Uniprot release / CRC64

[Sébastien Moretti]

Thanks Magali.

I will table a look at this analysis table.

There is one analysis table per species ?

> Hi Sébastien,
>
> You will not necessarily find it for each species, but in more recent
> releases, we have tried to include information about the Uniprot and
> Refseq releases used for each evidence.
> If you query the databases, you can find this information in the
> analysis table, for your analysis of interest.
>
> We do not store a checksum for protein entries, as the way we retrieve
> the data can vary and there might not be any.
> For more recent builds though, you can find a more detailed genebuild
> documentation which will tell you, for each source of evidence used, how
> many sequences were retrieved to start with, how many aligned and how
> many were actually used in the final gene set.
>
> Hope that helps.
>
>
> Regards,
> mag
>
> Sébastien Moretti wrote:
>> Hi
>>
>> do you store somewhere Uniprot release, and other db releases, you
>> used for each ensembl release ?
>>
>> Also, do you store the checksum (CRC64) for protein entries you used
>> to build an ensembl release ?
>>
>> Regards

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://bioinfo.unil.ch/